Fenilketonuria
Published on May 18, 2026
Risk Factors
Autosomal recessive inheritance; family history of PKU; consanguinity; Northern European / Irish descent have higher carrier frequency
Etiology
Deficiency of phenylalanine hydroxylase (classic PKU) or rarely deficiency of tetrahydrobiopterin (BH4) cofactor
Presentation
Normal at birth; if untreated, progressive intellectual disability, seizures, behavioral problems, and musty/mousy body odor by several months of age
Classic Exam
Fair skin, light hair, blue eyes (decreased melanin synthesis); eczematous rash; microcephaly in untreated older infants
Diagnostics
Elevated serum phenylalanine on newborn screening (Guthrie test or tandem mass spectrometry); phenylalanine level > 20 mg/dL in classic PKU
Management
Lifelong phenylalanine-restricted diet; medical formula supplemented with tyrosine; sapropterin (BH4) in responsive patients
Keywords
"Musty odor," "fair-haired child," "intellectual disability prevented by diet," "newborn screening," "phenylalanine hydroxylase deficiency"
01Pathophysiology
Phenylketonuria results from a deficiency of phenylalanine hydroxylase (PAH), the hepatic enzyme responsible for converting phenylalanine to tyrosine. This is the rate-limiting step in phenylalanine catabolism, and it requires the cofactor tetrahydrobiopterin (BH4) to function. When PAH is absent or severely reduced, phenylalanine accumulates in the blood and crosses the blood-brain barrier, where it exerts direct neurotoxic effects on the developing brain.
The accumulation of phenylalanine leads to competitive inhibition of large neutral amino acid transport across the blood-brain barrier. This reduces the availability of tyrosine, tryptophan, and other amino acids needed for neurotransmitter synthesis (dopamine, serotonin, norepinephrine). The deficit in dopamine and melanin (both derived from tyrosine) explains two hallmark findings: the neurological deterioration and the fair complexion (light skin, blonde hair, blue eyes) seen in untreated patients. Melanin production depends on tyrosine as its precursor, so tyrosine deficiency leads to hypopigmentation.
The musty or mousy body odor is caused by the accumulation of phenylacetic acid, a byproduct of phenylalanine metabolism through alternative transaminase pathways. When the primary hydroxylation pathway is blocked, phenylalanine is shunted into transamination and decarboxylation, producing phenylpyruvate, phenylacetate, and phenyllactate. These are the "phenylketones" excreted in urine, giving the disease its name.
A critical teaching point: the baby is normal at birth because maternal enzymes clear phenylalanine during fetal life via placental transfer. Damage only begins postnatally once the infant starts consuming phenylalanine through breast milk or formula. This is precisely why newborn screening is essential and why early dietary intervention prevents intellectual disability entirely.
In a small subset of cases (approximately 2%), the defect is not in PAH itself but in the synthesis or recycling of BH4. This distinction matters because BH4 is also required for tyrosine hydroxylase and tryptophan hydroxylase, meaning BH4-deficient patients will have more severe neurotransmitter deficiencies that a phenylalanine-restricted diet alone cannot correct.
02Classification and Clinical Manifestation
Classic PKU
Serum Phenylalanine
> 20 mg/dL (> 1200 micromol/L)
Clinical Features
Severe intellectual disability if untreated; seizures; eczema; musty odor; hypopigmentation
Moderate PKU
Serum Phenylalanine
10 - 20 mg/dL (600 - 1200 micromol/L)
Clinical Features
Variable cognitive impairment without treatment; milder phenotype
Mild PKU
Serum Phenylalanine
6 - 10 mg/dL (360 - 600 micromol/L)
Clinical Features
Usually milder or no cognitive deficits; still requires dietary management
Mild Hyperphenylalaninemia (non-PKU)
Serum Phenylalanine
2 - 6 mg/dL (120 - 360 micromol/L)
Clinical Features
Benign; generally does not require treatment; normal neurodevelopment
BH4-Deficient PKU (Malignant PKU)
Serum Phenylalanine
Variable
Clinical Features
Progressive neurological decline despite dietary phenylalanine restriction; dystonia, truncal hypotonia, seizures; caused by defective BH4 synthesis or recycling
Classification | Serum Phenylalanine | Clinical Features |
|---|---|---|
Classic PKU | > 20 mg/dL (> 1200 micromol/L) | Severe intellectual disability if untreated; seizures; eczema; musty odor; hypopigmentation |
Moderate PKU | 10 - 20 mg/dL (600 - 1200 micromol/L) | Variable cognitive impairment without treatment; milder phenotype |
Mild PKU | 6 - 10 mg/dL (360 - 600 micromol/L) | Usually milder or no cognitive deficits; still requires dietary management |
Mild Hyperphenylalaninemia (non-PKU) | 2 - 6 mg/dL (120 - 360 micromol/L) | Benign; generally does not require treatment; normal neurodevelopment |
BH4-Deficient PKU (Malignant PKU) | Variable | Progressive neurological decline despite dietary phenylalanine restriction; dystonia, truncal hypotonia, seizures; caused by defective BH4 synthesis or recycling |
Maternal PKU is another high-yield concept. A woman with PKU who does not maintain strict dietary control before and during pregnancy exposes the fetus to high phenylalanine levels. The fetus itself may not have PKU, but the teratogenic effect of maternal hyperphenylalaninemia causes microcephaly, congenital heart defects, intrauterine growth restriction, and intellectual disability in the offspring. The vignette typically presents a woman with a history of PKU who stopped her diet and gives birth to an affected infant.
03Diagnostic Workup
Newborn screening (Guthrie test / Tandem mass spectrometry)
Role
Best initial test
Key Finding
Elevated phenylalanine; performed 24-48 hours after birth (after protein feeding has begun)
Quantitative serum phenylalanine
Role
Confirmatory / Classification
Key Finding
Phenylalanine > 20 mg/dL in classic PKU; also measures tyrosine (low)
Phenylalanine-to-tyrosine ratio
Role
Confirmatory adjunct
Key Finding
Elevated ratio (> 3) supports PAH deficiency
BH4 loading test
Role
Rule out BH4 deficiency
Key Finding
Phenylalanine drops significantly after BH4 administration if the defect is in the cofactor, not the enzyme
Urine pterin analysis and DHPR assay
Role
Distinguish BH4 subtypes
Key Finding
Abnormal pterin profile or low dihydropteridine reductase (DHPR) activity indicates cofactor deficiency
Genetic testing (PAH gene)
Role
Definitive / Prenatal
Key Finding
Identifies the exact mutation; useful for carrier testing, genetic counseling, and predicting BH4 responsiveness
Test | Role | Key Finding |
|---|---|---|
Newborn screening (Guthrie test / Tandem mass spectrometry) | Best initial test | Elevated phenylalanine; performed 24-48 hours after birth (after protein feeding has begun) |
Quantitative serum phenylalanine | Confirmatory / Classification | Phenylalanine > 20 mg/dL in classic PKU; also measures tyrosine (low) |
Phenylalanine-to-tyrosine ratio | Confirmatory adjunct | Elevated ratio (> 3) supports PAH deficiency |
BH4 loading test | Rule out BH4 deficiency | Phenylalanine drops significantly after BH4 administration if the defect is in the cofactor, not the enzyme |
Urine pterin analysis and DHPR assay | Distinguish BH4 subtypes | Abnormal pterin profile or low dihydropteridine reductase (DHPR) activity indicates cofactor deficiency |
Genetic testing (PAH gene) | Definitive / Prenatal | Identifies the exact mutation; useful for carrier testing, genetic counseling, and predicting BH4 responsiveness |
The diagnostic approach begins with newborn screening, which is mandatory in virtually all countries. The original Guthrie bacterial inhibition assay has been largely replaced by tandem mass spectrometry (MS/MS), which simultaneously measures phenylalanine and tyrosine, providing both the absolute level and the ratio. Screening must occur after the infant has been fed protein (ideally 24-48 hours of life), because a sample taken too early (before phenylalanine accumulates from dietary intake) can yield a false negative.
When the screen is positive, the next step is a quantitative serum amino acid analysis to confirm the phenylalanine level and classify the severity. The phenylalanine-to-tyrosine ratio being elevated helps differentiate PAH deficiency from transient or benign hyperphenylalaninemia.
Every confirmed case should undergo a BH4 loading test to rule out cofactor deficiency. This is done by giving an oral dose of BH4 and measuring the phenylalanine response over 24 hours. If phenylalanine drops substantially (typically > 30%), the patient is considered BH4-responsive. This has direct treatment implications: BH4-responsive patients can use sapropterin and may tolerate a less restricted diet. If BH4 deficiency is suspected, urine pterin profiling and erythrocyte DHPR enzyme assay are performed to identify the exact metabolic block.
04Management and Treatment
Dietary restriction (lifelong)
Treatment
Low-phenylalanine diet
Details
Restrict natural protein; phenylalanine intake titrated to keep blood levels at 2-6 mg/dL (120-360 micromol/L)
Medical formula
Treatment
Phenylalanine-free amino acid formula
Details
Provides essential amino acids, calories, vitamins, and minerals without phenylalanine; supplemented with tyrosine
BH4-responsive patients
Treatment
Sapropterin dihydrochloride (Kuvan)
Details
10-20 mg/kg/day orally; allows liberalization of diet in responsive patients; trial period needed to confirm response
BH4-deficient PKU
Treatment
BH4 supplementation + neurotransmitter precursors
Details
L-DOPA/carbidopa and 5-hydroxytryptophan to replace deficient dopamine and serotonin; diet alone is insufficient
Maternal PKU
Treatment
Strict preconception dietary control
Details
Target phenylalanine 2-6 mg/dL before conception and throughout pregnancy
Pegvaliase (Palynziq)
Treatment
Enzyme substitution therapy
Details
PEGylated phenylalanine ammonia lyase; subcutaneous injection for adults with uncontrolled PKU despite diet; reserved for patients > 16 years
Setting | Treatment | Details |
|---|---|---|
Dietary restriction (lifelong) | Low-phenylalanine diet | Restrict natural protein; phenylalanine intake titrated to keep blood levels at 2-6 mg/dL (120-360 micromol/L) |
Medical formula | Phenylalanine-free amino acid formula | Provides essential amino acids, calories, vitamins, and minerals without phenylalanine; supplemented with tyrosine |
BH4-responsive patients | Sapropterin dihydrochloride (Kuvan) | 10-20 mg/kg/day orally; allows liberalization of diet in responsive patients; trial period needed to confirm response |
BH4-deficient PKU | BH4 supplementation + neurotransmitter precursors | L-DOPA/carbidopa and 5-hydroxytryptophan to replace deficient dopamine and serotonin; diet alone is insufficient |
Maternal PKU | Strict preconception dietary control | Target phenylalanine 2-6 mg/dL before conception and throughout pregnancy |
Pegvaliase (Palynziq) | Enzyme substitution therapy | PEGylated phenylalanine ammonia lyase; subcutaneous injection for adults with uncontrolled PKU despite diet; reserved for patients > 16 years |
The cornerstone of PKU management is a lifelong phenylalanine-restricted diet initiated as early as possible, ideally within the first 7-10 days of life. The goal is to maintain blood phenylalanine between 2-6 mg/dL (120-360 micromol/L). This requires severe restriction of high-protein foods (meat, dairy, eggs, nuts, legumes) and use of a phenylalanine-free medical formula that supplies adequate protein and calories.
Tyrosine becomes a conditionally essential amino acid in PKU because the conversion pathway from phenylalanine is blocked. Therefore, tyrosine supplementation through medical formula is standard.
For patients identified as BH4-responsive on loading test, sapropterin (synthetic BH4) at 10-20 mg/kg/day can increase residual PAH activity enough to allow a more liberalized diet. A formal trial period of 1-4 weeks with phenylalanine monitoring is needed to confirm responsiveness before committing to long-term therapy.
In BH4 deficiency, diet alone fails because the cofactor is also required for catecholamine and serotonin synthesis. These patients need BH4 replacement along with L-DOPA/carbidopa (for dopamine) and 5-hydroxytryptophan (for serotonin), plus folinic acid if the defect involves dihydropteridine reductase (which also affects folate metabolism).
For maternal PKU, the critical teaching point is that dietary control must begin before conception. If a woman with PKU becomes pregnant with uncontrolled phenylalanine levels, the fetal damage (cardiac defects, microcephaly) occurs during the first trimester and is irreversible.
Pegvaliase is a newer enzyme substitution therapy approved for adults (> 16 years) with uncontrolled PKU. It is administered subcutaneously and works by degrading phenylalanine through an alternative enzymatic pathway (phenylalanine ammonia lyase). It carries a risk of anaphylaxis and requires an observation protocol during initiation.
05Differential Diagnosis and Distractors
Maple Syrup Urine Disease (MSUD)
Why It Is Similar
Amino acid metabolism disorder; intellectual disability; abnormal odor
Key Discriminator
MSUD has a sweet/burnt sugar odor (not musty); presents with lethargy, poor feeding, and encephalopathy in the first week; elevated branched-chain amino acids (leucine, isoleucine, valine)
Homocystinuria
Why It Is Similar
Autosomal recessive; intellectual disability; fair complexion possible
Key Discriminator
Homocystinuria features Marfanoid habitus, lens subluxation (downward), thromboembolism; elevated methionine and homocysteine, not phenylalanine
Albinism (Oculocutaneous)
Why It Is Similar
Hypopigmentation; fair skin and light eyes
Key Discriminator
Albinism has normal intelligence and normal phenylalanine levels; defect is in tyrosinase, not PAH
Galactosemia
Why It Is Similar
Newborn screening positive; metabolic disorder with intellectual disability
Key Discriminator
Galactosemia presents with jaundice, hepatomegaly, cataracts, E. coli sepsis after milk exposure; galactose-1-phosphate uridyltransferase deficiency
Congenital Hypothyroidism
Why It Is Similar
Detected on newborn screening; intellectual disability if untreated
Key Discriminator
Hypothyroidism presents with prolonged jaundice, macroglossia, umbilical hernia, hypotonia, constipation; elevated TSH, not phenylalanine
BH4 deficiency
Why It Is Similar
Elevated phenylalanine; same screening finding as classic PKU
Key Discriminator
Neurological deterioration continues despite dietary restriction; requires neurotransmitter precursor supplementation; abnormal pterin profile
Diagnosis | Why It Is Similar | Key Discriminator |
|---|---|---|
Maple Syrup Urine Disease (MSUD) | Amino acid metabolism disorder; intellectual disability; abnormal odor | MSUD has a sweet/burnt sugar odor (not musty); presents with lethargy, poor feeding, and encephalopathy in the first week; elevated branched-chain amino acids (leucine, isoleucine, valine) |
Homocystinuria | Autosomal recessive; intellectual disability; fair complexion possible | Homocystinuria features Marfanoid habitus, lens subluxation (downward), thromboembolism; elevated methionine and homocysteine, not phenylalanine |
Albinism (Oculocutaneous) | Hypopigmentation; fair skin and light eyes | Albinism has normal intelligence and normal phenylalanine levels; defect is in tyrosinase, not PAH |
Galactosemia | Newborn screening positive; metabolic disorder with intellectual disability | Galactosemia presents with jaundice, hepatomegaly, cataracts, E. coli sepsis after milk exposure; galactose-1-phosphate uridyltransferase deficiency |
Congenital Hypothyroidism | Detected on newborn screening; intellectual disability if untreated | Hypothyroidism presents with prolonged jaundice, macroglossia, umbilical hernia, hypotonia, constipation; elevated TSH, not phenylalanine |
BH4 deficiency | Elevated phenylalanine; same screening finding as classic PKU | Neurological deterioration continues despite dietary restriction; requires neurotransmitter precursor supplementation; abnormal pterin profile |
06Traps and High-Yield Pearls
The most common trap on this topic involves timing of the newborn screen. A vignette may describe a baby screened within the first few hours of life whose test comes back normal, then later presents with developmental delay and a musty odor. Students who do not recognize that early screening before adequate protein intake can produce a false-negative result will miss the diagnosis. The test must be performed after the infant has been feeding for at least 24-48 hours.
Another frequently tested trap is the distinction between classic PKU and BH4 deficiency. Both produce elevated phenylalanine on screening, but BH4 deficiency will not respond to dietary restriction alone. If a vignette describes a child on a phenylalanine-restricted diet who continues to have seizures and progressive neurological decline, the answer is BH4 deficiency, and the next step is a BH4 loading test or urine pterin analysis.
Maternal PKU is a perennial favorite. The vignette will describe a woman with known PKU who discontinued her diet, presenting with a newborn who has microcephaly and congenital heart defects. The infant's own phenylalanine level may be normal (the child may not carry two copies of the mutation). The damage was caused by in utero exposure to the mother's elevated phenylalanine, not by the infant's own metabolism.
Finally, students sometimes confuse the biochemical pathway. Phenylalanine hydroxylase converts phenylalanine to tyrosine, not the other way around. The downstream consequences (reduced melanin, reduced catecholamines) all flow from tyrosine deficiency, and remembering this single enzymatic block connects every clinical feature: the fair complexion, the neurological damage, and the rationale for tyrosine supplementation.